VS Code Remote Usage
Auto-loading the JuliaHPC module
On Noctua, the julia executable is only available after loading a Julia module (see Julia: Getting Started). To use the Julia VS Code extension within a VS Code SSH remote session you must make sure that a Julia module is automatically loaded when the Julia Language Server starts (i.e. when opening or creating a Julia file) or when you open the Julia REPL (i.e. Julia: Start REPL). This can be done by pointing the extension to a wrapper script which loads the module and then starts julia.
We provide a default wrapper script under /opt/software/pc2/julia/julia_vscode on Noctua 2 (/cm/shared/apps/pc2/julia/julia_vscode on Noctua 1) and you should point the Julia VS Code extension to this wrapper by specifying the Julia: Executable Path (julia.executablePath) setting.
Note that the default wrapper above automatically loads the latest version of the JuliaHPC module and, correspondingly, the latest Julia version. If you want to use a specific version, you may point the Julia VS Code extension to version specific wrapper scripts that we provide in the root directory of the module (given by the environment variable $EBROOTJULIAHPC after you’ve loaded the module). Example: /opt/software/pc2/EB-SW/software/JuliaHPC/1.8.2-foss-2022a-CUDA-11.7.0/julia_vscode on Noctua 2.
Jupyter notebooks (in VSCode)
Open a terminal and ssh into Noctua 2.
Load the
JuliaorJuliaHPCmodule that you want to use, e.g.module load lang/JuliaHPC/1.8.5-foss-2022a-CUDA-11.7.0.Start
juliaand install theIJuliapackage into the default, global environment (i.e.v1.8in this example case).Afterwards, execute
using IJuliaand useIJulia.installkernel("Noctua 2 JuliaHPC").Finally, open VS Code, open a remote session on Noctua 2, and select your custom IJulia kernel when running Jupyter notebook files.
Note: If you plan to use your custom IJulia kernel in our centrally hosted JupyterHub service, use IJulia.installkernel("Noctua 2 JuliaHPC"; env=Dict("JULIA_DEPOT_PATH"=>ENV["JULIA_DEPOT_PATH"])).
Julia wrapper: manual approach (not recommended!)
An exemplary julia wrapper script on Noctua 2:
#!/bin/bash
# ------------------------------------------------------------
export MODULEPATH=/etc/modulefiles:/usr/share/modulefiles || :
source /usr/share/lmod/lmod/init/profile
if [ -f "/opt/software/pc2/lmod/modules/DefaultModules.lua" ];then
export MODULEPATH="$MODULEPATH:/opt/software/pc2/lmod/modules"
export LMOD_SYSTEM_DEFAULT_MODULES="DefaultModules"
else
if [ -f "/usr/share/modulefiles/StdEnv.lua" ];then
export LMOD_SYSTEM_DEFAULT_MODULES="StdEnv"
fi
fi
module --initial_load restore
# ------------------------------------------------------------
module load lang
module load JuliaHPC # or module load Julia
exec julia "${@}"
Afterwards, make the wrapper executable (i.e. via chmod u+x julia_wrapper.sh) and make the "Executable Path" setting of the Julia extension (julia.executablePath) point to this file. (Note: The first block makes the module command available.)
Using a direnv environment with the integrated Julia REPL
Modify the script above to the following:
#!/bin/bash
# ------------------------------------------------------------
export MODULEPATH=/etc/modulefiles:/usr/share/modulefiles || :
source /usr/share/lmod/lmod/init/profile
if [ -f "/opt/software/pc2/lmod/modules/DefaultModules.lua" ];then
export MODULEPATH="$MODULEPATH:/opt/software/pc2/lmod/modules"
export LMOD_SYSTEM_DEFAULT_MODULES="DefaultModules"
else
if [ -f "/usr/share/modulefiles/StdEnv.lua" ];then
export LMOD_SYSTEM_DEFAULT_MODULES="StdEnv"
fi
fi
module --initial_load restore
# ------------------------------------------------------------
DIRENV=$HOME/.local/bin/direnv # path to you direnv binary
export DIRENV_BASH=/bin/bash
ml lang
ml JuliaHPC
if [ -z "${JULIA_LANGUAGESERVER}" ]; then
# REPL process; use direnv exec to load .envrc file
exec "${DIRENV}" exec "${PWD}" julia "${@}"
else
# Language Server process; exec the fallback julia
exec julia "${@}"
fiThis will load the direnv environment when starting the integrated Julia REPL (and only the JuliaHPC module when starting the Julia Language Server).
Noctua 1
You can same approach as above but the module related paths are different. Specifically, on Noctua 1 the module part should be
# ------------------------------------------------------------
export MODULEPATH=/cm/shared/apps/pc2/lmod/modules:/cm/shared/apps/pc2/EB-SW/modules/all || :
source /usr/share/lmod/lmod/init/profile
if [ -f "/cm/shared/apps/pc2/lmod/modules/DefaultModules.lua" ];then
export LMOD_SYSTEM_DEFAULT_MODULES="DefaultModules"
else
if [ -f "/usr/share/modulefiles/StdEnv.lua" ];then
export LMOD_SYSTEM_DEFAULT_MODULES="StdEnv"
fi
fi
module --initial_load restore
# ------------------------------------------------------------